IceR improves proteome coverage and data completeness in global and single-cell proteomics | Nature Communications
Quantitative shotgun proteome analysis by direct infusion | Nature Methods
Quantifying Plant Dynamic Proteomes by SWATH-based Mass Spectrometry: Trends in Plant Science
Hybrid-DIA: intelligent data acquisition integrates targeted and discovery proteomics to analyze phospho-signaling in single spheroids | Nature Communications
Strategies to enable large-scale proteomics for reproducible research | Nature Communications
DIA-Umpire: comprehensive computational framework for data-independent acquisition proteomics | Nature Methods
Implementing the reuse of public DIA proteomics datasets: from the PRIDE database to Expression Atlas | Scientific Data
DIA mass spectrometry | Nature Methods
Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning | Nature Methods
DIALib-QC an assessment tool for spectral libraries in data-independent acquisition proteomics | Nature Communications
A comprehensive LFQ benchmark dataset on modern day acquisition strategies in proteomics | Scientific Data
Mass-spectrometric exploration of proteome structure and function | Nature
Data-independent acquisition mass spectrometry (DIA-MS) for proteomic applications in oncology - Molecular Omics (RSC Publishing) DOI:10.1039/D0MO00072H
Benchmarking commonly used software suites and analysis workflows for DIA proteomics and phosphoproteomics | Nature Communications
Multiplexed peptide analysis using data-independent acquisition and Skyline | Nature Protocols
New Nature Communications publication by Mann & Theis Groups harnesses the benefits of large-scale peptide
Use of Hybrid Data-Dependent and -Independent Acquisition Spectral Libraries Empowers Dual-Proteome Profiling | Journal of Proteome Research
Ultra-fast proteomics with Scanning SWATH | Nature Biotechnology
DDA and DIA are the common data acquisition strategies in shotgun... | Download Scientific Diagram
Data-independent acquisition mass spectrometry (DIA-MS) for proteomic applications in oncology - Molecular Omics (RSC Publishing) DOI:10.1039/D0MO00072H
Chromatogram libraries improve peptide detection and quantification by data independent acquisition mass spectrometry | Nature Communications
DIAMetAlyzer allows automated false-discovery rate-controlled analysis for data-independent acquisition in metabolomics | Nature Communications
